Lindqvist collaborates with Wrangell Cooperative Association to repatriate 3,000-year-old human remains

Charlotte Lindqvist, associate professor, Department of Biological Sciences.

Charlotte Lindqvist, associate professor, Department of Biological Sciences

Charlotte Lindqvist found herself tasked with transporting 3,000-year-old human remains across the Alaskan panhandle to their final resting place. The repatriated the individual is known as Tatóok yík yées sháawat (Young Lady in Cave) to her distant descendants, the Tlingit people of southeastern Alaska.  “As a biologist, you want to hold onto any ancient DNA samples in case you can possibly learn more from them in the future. However, these remains meant something to this community and returning them was the right thing to do,” Lindqvist says. “And I felt that it was very important to bring it there personally.”  Read Research News.

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UB biologist returns ‘Young Lady in Cave’ remains to Alaskan tribe

Charlotte Lindqvist, Forest Service archeologist Gina Esposito, WCA receptionist Lexi Hayes, Forest Service district Tory Houser, WCA Tribal President Ed Rilatos and retired Forest Service archeologist Jane Smith.

(From left) Charlotte Lindqvist, Forest Service archaeologist Gina Esposito, Wrangell Cooperative Association (WCA) receptionist Lexi Hayes, Forest Service District Ranger Tory Houser, WCA Tribal President Ed Rilatos and retired Forest Service archaeologist Jane Smith. Photo: Courtesy of Charlottee Lindqvist

By TOM DINKI

Published January 6, 2025

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Charlotte Lindqvist.
“These remains meant something to this community and returning them was the right thing to do. And I felt that it was very important to bring it there personally. ”
Charlotte Lindqvist, professor
Department of Biological Sciences

Charlotte Lindqvist is used to handling ancient DNA. 

A UB evolutionary biologist, she’s extracted genetic information from the tooth of a Paleolithic-era polar bear and analyzed the bone of what’s thought to be among the oldest confirmed domestic dogs in the Americas.

Still, even that couldn’t fully prepare her for the responsibility she found herself tasked with this past summer: transporting 3,000-year-old human remains across the Alaskan panhandle to their final resting place. 

Lindqvist, professor of biological sciences, College of Arts and Sciences, repatriated the individual now known as Tatóok yík yées sháawat (Young Lady in Cave) to her distant descendants, the Tlingit people of southeastern Alaska.

“As a biologist, you want to hold onto any ancient DNA samples in case you can possibly learn more from them in the future. However, these remains meant something to this community and returning them was the right thing to do,” Lindqvist says. “And I felt that it was very important to bring it there personally.”

The remains, a small fragment of a femur bone, were discovered in a cave near Alaska’s Wrangell Island during an expedition by the U.S. Forest Service and University of South Dakota in 2003. Initially believed to belong to a bear, Lindqvist’s team discovered in 2018 that the bone in fact belonged to a young woman with a genetic connection to Tlingit people and other Alaskan Native tribes along the coast. 

After leading a study on the discovery that was published last year in the journal iScience, Lindqvist made plans to return the remains to the Wrangell Cooperative Association (WCA), a federally recognized Alaskan tribe that includes Tlingit people.

Already heading to the region for a field trip with other UB researchers this past June, Lindqvist made a detour to Wrangell Island to deliver the remains personally, as well as hold a public presentation about the discovery. 

“It meant a lot to everyone here that Charlotte traveled to Wrangell to personally deliver the remains to the tribe,” says Gina Esposito, an archaeologist with the U.S. Forest Service in Alaska who was involved in the 2003 cave excavation. “The collaboration and respect between the scientific community, the WCA and the Forest Service stands out to me as one of the most successful aspects of this project.”

Charlotte Lindqvist giving a presentation to the Wrangell community.

Charlotte Lindqvist gives a presentation to the Wrangell community in June about the discovery of Tatóok yík yées sháawat and her genetic connection to people still living in the area today. Photo: Courtesy of Charlotte Lindqvist

Building trust with Native communities

The relationship between the scientific community and Native American tribes has, historically, been fraught. Scientists have often failed to get informed permission to research Native remains and artifacts.

There have been efforts to improve this. The Native American Graves Protection and Repatriation Act of 1990 requires institutions that receive federal funding to return Native American remains to descendants and culturally affiliated tribes, while the American Society of Human Genetics released guidance in 2020 on responsibly researching ancient human DNA. 

Following Lindqvist’s discovery that the bone fragment belonged to a human, WCA was asked for permission to further study the remains, as well as to name the individual. WCA Tribal Administrator Esther Ashton served as a co-author on the study and it was agreed that the study’s data will only be made available to the scientific community upon request and not used for commercial purposes.

“I think it was very important to have the Wrangell Cooperative Association part of this whole process,” Lindqvist says.

She credits the pre-existing cooperation between the scientific community and the Tlingit people, which dates back to the discovery of 10,000-year-old human remains in On Your Knees Cave in 1996. That 12-year research project ended in reburial and a festival celebration attended by Native people and scientists. 

Esposito says she and her Forest Service colleagues, such as District Ranger Tory Houser, continue to nurture that relationship by attending tribal council meetings, working with Native youth and participating in joint field trips.

“I believe all these little interactions over decades have built trust and, for me, even friendships,” she says. “It’s a testament to all the people involved that the Young Lady in the Cave collaboration has been so rewarding and positive.”

Cave remains add to coastal migration theory

Petroglyph Beach in Wrangell has rock etchings that are believed to be thousands of years old. Photo: Charlotte Lindqvist

Tatóok yík yées sháawat’s genetic connection to Tlingit people and other tribes along the coast corresponds with Native American oral tradition about their ancestors, Lindqvist notes.

“According to Tlingit oral stories, they’ve been there since time immemorial. Now, the genetics is confirming that they’ve indeed been there for a long time,” she says.

The research has also shed light on how humans spread across the Americas after traveling into the continent via the Bering land bridge. Also found in Tatóok yík yées sháawat’s coastal cave was a bone of a dog that lived approximately 10,000 years ago. Lindqvist’s analysis of the dog’s Siberian lineage supports the theory that the first humans — and their dogs — to migrate southward did so through an ice-free coastal route along Alaska’s Pacific border, rather than an ice-free, in-land route through Canada. 

As for Tatóok yík yées sháawat, Lindqvist says it’s impossible to know much about her life or how she died. What’s certain is that the cave she was found in was used by humans for thousands of years.

“Whether it was used as a burial site or actually some kind of living space, it’s hard to say,” she says. 

While her work has implications on human prehistory, Lindqvist’s main research focus — and the reason she analyzed the cave bones in the first place — is how Ice Age-induced climate change impacted southeastern Alaska’s ecosystem. The purpose of her field trip this past summer was to core lake sediments on Alaska’s Baranof Island. 

“The deeper you get into the lake, the further back you go in time,” Lindqvist says. “We're going to use the mud from those cores to get an idea of how the ecosystem responded to Ice Age climatic changes, hopefully going back to the last glacial maximum.”

Faculty Profile

  • Charlotte Lindqvist

    PhD

    Charlotte Lindqvist.

    Charlotte Lindqvist

    PhD

    Charlotte Lindqvist

    PhD

    Research Interests

    Evolutionary biology; molecular phylogenetics and population genomics

    Education

    PhD University of Copenhagen, Denmark
    Postdoctoral Research at University of Oslo, Norway

    Research Summary

    Research in the Lindqvist Lab is broadly concerned with the evolutionary genetic basis of diversification in natural populations and environments to better understand the processes of speciation and the impact of hybridization/admixture, and responses to global environmental perturbations in both animals and plants. My research uses genetic/genomic and metagenomic analyses of modern and historical/ancient material (ancient DNA) to address longstanding questions in the evolutionary history of mammals and flowering plants. Current projects include paleogenetic surveys of Late Quaternary subfossil biodiversity and lake sediments in Southeast Alaska, evolutionary genomics of Arctic and boreal carnivore mammals (with a focus on ursine bears and mustelids), and population genomics/phylogenomics of several angiosperm radiations.

    Selected Publications

    • Tomlin CM, Rajaraman S, Sebesta JT, Scheen A-C, Bendiksby M, Low YW, Salojärvi J, Michael TP, Albert VA, Lindqvist C (2024) Allopolyploid origin and diversification of the Hawaiian endemic mints. Nature Communications 15 (1):3109. doi:10.1038/s41467-024-47247-y
    • Saul F, Scharmann M, Wakatake T, Rajaraman S, Marques A, Freund M, Bringmann G, Channon L, Becker D, Carroll E, Low YW, Lindqvist C, Gilbert KJ, Renner T, Masuda M, Richter M, Vogg G, Shirasu K, Michael TP, Hedrich R, Albert VA, Fukushima K. Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis. Nature Plants. 2023 Nov 23:1-6.
    • Silva Coelho, F.A., Gill, S., Tomlin, C.M., Papavassiliou, M., Farley, S.D., Cook, J., Sonsthagen, S., Sage, G.K., Heaton, T.H., Talbot, S.L., Lindqvist, C. (2023) Ancient bears provide insights into Pleistocene ice age refugia in Southeast Alaska. Molecular Ecology00, 1 16.
    • Aqil, M.A., Gill, S., Gokcumen, O., Malhi, R.S., Reese, E.A., Smith, J.L., Heaton, T.H., Lindqvist, C. (2023) A Paleogenome from a Southeast Alaska Holocene individual supports genetic continuity, archeological records, and Tlingit oral history. iScience 26 (5): 106581.
    • Low YW, Rajaraman S, Tomlin CM, Ahmad JA, Ardi WH, Armstrong K, Athen P, Berhaman A, Bone RE, Cheek M, Cho NRW, Choo LM, Cowie ID, Crayn D, Fleck SJ, Ford AJ, Forster PI, Girmansyah D, Goyder DJ, Gray B, Heatubun CD, Ibrahim A, Ibrahim B, Jayasinghe HD, Kalat MA, Kathriarachchi HS, Kintamani E, Koh SL, Lai JTK, Lee SML, Leong PKF, Lim WH, Lum SKY, Mahyuni R, McDonald WJF, Metali F, Mustaqim WA, Naiki A, Ngo KM, Niissalo M, Ranasinghe S, Repin R, Rustiami H, Simbiak VI, Sukri RS, Sunarti S, Trethowan LA, Trias-Blasi A, Vasconcelos TNC, Wanma JF, Widodo P, Wijesundara DSA, Worboys S, Yap JW, Yong KT, Khew GSW, Salojärvi J, Michael TP, Middleton DJ, Burslem DFRP, Lindqvist C, Lucas EJ, Albert VA. Genomic insights into rapid speciation within the world’s largest tree genus Syzygium. Nature Communications. 2022 Sep 12, 13(1):5031. 
    • Lan, T., Leppälä, K., Tomlin, C., Talbot, S.L., Sage, G.K., Farley, S.D., Shideler, R.T., Bachmann, L., Wiig, Ø., Albert, V.A., Salojärvi, J., Mailund, T., Drautz-Moses, D.I., Schuster, S.C., Herrera-Estrella, L., Lindqvist, C. (2022). Insights into bear evolution from a Pleistocene polar bear genome. Proceedings of the National Academy of Sciences, USA 119 (24) e2200016119. 
    • Kosintsev, P.A., Bocherens, H., Kirillova, I.V., Levchenko, V.A., Zazovskaya, E.P., Trofimova, S.S., Lan, T., Lindqvist, C.* (2022) Palaeoecological and genetic analyses of Late Pleistocene bears in Asiatic Russia. Boreas 51: 465–480.
    • da Silva Coelho FA, Gill S, Tomlin CM, Heaton TH, Lindqvist C. (2021) An early dog from southeast Alaska supports a coastal route for the first dog migration into the Americas. Proceedings of the Royal Society B 288(1945):20203103. 
    • Lindqvist, C. & Rajora, O.P. (Eds.) 2019. Paleogenomics. Genome-Scale Analysis of Ancient DNASpringer Nature.
    • Lesnek, A.J., Briner, J.P., Lindqvist, C., Baichtal, J.F., Heaton, T.H. (2018). Deglaciation of the Pacific coastal corridor and the human colonization of the Americas. Science Advances 4: 5.
    • Lan, T., Gill, S., Bellemain, E., Bischof, R., Nawaz, M.A., Lindqvist, C. (2017). Evolutionary history of enigmatic bears in the Tibetan Plateau-Himalaya Region and the identity of the Yeti. Proceedings of the Royal Society B 284: 20171804.
    • Welch, A.J., Hofer, K., Ratan, A., Drautz, D., Schuster, S.C., Lindqvist, C. (2016) The quest to resolve recent radiations: Plastid phylogenomics of extinct and endangered Hawaiian endemic mints (Lamiaceae). Mol Phyl Evol 99: 16-33.
    • Miller, W., Schuster, S.C., Welch, A.J., Ratan, A., Bedoya-Reina, O.C., Zhao, F., Kim, H.L., Burhans, R.C., Drautz, D.I., Wittekindt, N.E., Tomsho, L.P., Ibarra-Laclette, E., Herrera-Estrella, L., Peacock, E., Farley, S., Sage, G.K., Rode, K., Obbard, M., Montiel, R., Bachmann, L., Ingólfsson, Ó., Aars, J., Mailund, T., Wiig, Ø., Talbot, S.L., Lindqvist, C. (2012). Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proc Natl Acad Sci, USA 109(36): E2382-E2390.
    • Lindqvist, C., Schuster, S.C., Sun, Y., Talbot, S.L., Qi, J., Ratan, A. Tomsho, L.P., Kasson, L., Zeyl, E., Aars, J., Miller, W., Ingolfsson, O., Bachmann, L., Wiig, Ø (2010). Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear. Proc Natl Acad Sci, USA 107: 5053-5057.
    • Scheen, A.-C., Bendiksby, Ryding, O., , Mathiesen, C., Albert, V.A., Lindqvist, C. (2010). Molecular phylogenetics, character evolution, and suprageneric classification of Lamioideae (Lamiaceae). Annals Miss Bot Gard 97: 191-218.
    • Lindqvist, C., Albert, V.A. (2002). Origin of the Hawaiian endemic mints within North American Stachys (Lamiaceae). Am J Bot 89: 1709-1724.